mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCAGCTTCATCTTCTCATGGC CATAAGCAGGTGAAGCTGCCA GTTTGTGCGCCATAAGCAGGTGAAGCTGCCAGCATGATCTGAAAGCATCTCAAACCAGCGATCAGATCATCCGGCAGCTTCATCTTCTCATGGCAGCACAC ACCAACGCACGCCTTATTTTGCCCATCCCCCTAATCTCTCTCTTTGATAAGGTTTCTTCTCCCATATCTCTCTAGCTAGCTACTAGGCATGGCGATTATGGAGGTAGATGAGATGGGCTGTTAATTCGCTTTGTTTGTGCGCCATAAGCAGGTGAAGCTGCCAGCATGATCTGAAAGCATCTCAAACCAGCGATCAGATCATCCGGCAGCTTCATCTTCTCATGGCAGCACACCAGCTTGATTGATTGATAATGAAACCCTAGGAGCAGGTAGCTTGGCTTCTCGATCTTAGCCTGATCTTATACAAGGACGATCGATTAGGCCAAATCAGGAGTTCAACAGTCCATTATGCAGAAATTGAAGTCTGAATAATTAAGCAGTAGGATCCATCTGACGAATGAACATATATTTATATATAAGCTATTATATTATCAGTTATTTCAGATGCTGCGTGATCTGAAGAATTTTCGTCCTTAGAGGCATCTTACGCGTTCCATCCATGCCTGAAGGATGATCTCACATCTGAGCAAATTAAATGCGATGAATTAGATTCCCATATTTACTCGACCTCTTATTGCTAGGGATATATATAACCTCTCTTTGATATATGTGGACGCTCATTGTCATCCAAAAGCAAGATTAGCTCCTCTAATTTTGAGCACTGACGCATGCCACTGATAAACCTTTTAAACTATATAAACAAACTTTCAGTTGCAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC 2 0 3' arm Oryza_sativa mirnest MIR167_1 5e-43 osa-MIR167g 3e-41 -50.1 ...((((((((((.((.(((((((((((((...(((((((((..((...........))..)))))))))..))))))))))))).)).))))).))))). (-50.1)