mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATCTTCATCGTCATCACAAG TGTGAAGAAGAGGAAGATGGA TCACTCCCAAGCGAATGGAGGATGTGAAGAAGAGGAAGATGGAGGATGATAATATTTTAATCAACGGCCAAGATTTTAATTCATCTTCATCGTCATCACAAGATCACCTGCGTTCTTTACT CCACGCGTCCGGTGACAGCCACAAAGTCTAACTACTCAATCATTAGCGTCGCGCGCACACACAGAGACTCTCACTCCCAAGCGAATGGAGGATGTGAAGAAGAGGAAGATGGAGGATGATAATATTTTAATCAACGGCCAAGATTTTAATTCATCTTCATCGTCATCACAAGATCACCTGCGTTCTTTACTCGACCCTCTTTCCAAGTCCCAGCTCGTCGATCTCCTCTCTAGACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTGTCGCCAGTGCAGATCCAGTTCATCGAAAGCTTTTTGTTCGTGGCTTAGCTTGGAATACCACTTCGGAAACCTTGTGTGCTGCATTTCGAGTGCATGGTGAAATAGAAGAAGGAGCTGTCATCTATGACAAAGCAACAGGAAAATCACGTGGCTATGGTTTCATAACATACAAGCACATGGAGTCAACCCAGAGTGCGCTAAGAGCACCTAGCAAGTTGATTGACGGTCGGTTGGCTGTCTGTAATTTAGCTTGTGAGGGATTAAGTGGGGTGAGTGCTGTGCCTGATTTAGCACAGAGGAAGCTCTACATTGGGGGCCTGTCACCAGAAGTAACAACTGAGGTGCTGCTGAACTTCTTTGGAAGACATGGTGAGATTGAGGAAGGTTCAGTTGCATATGACAAGGACACAAATGAATCACGTGGATTTGGCTTTGTTACATACAAAACAGTCGAGGCAGCAAAGAAAGCCGTAGATGATCCACACAAGACTCTTGGGGGAAGGACTATCATTGTGAAGCTTGCTGATACCCACAAGGGCAAGCCACCGCAAACACAATTACCCGCAGCTGTGGTTCCAGTGCCTTTACCTTTGGGAGCCGGATATCCACAGGCTGGAAAAGCACATGCTAACACTCCCCCTGTTGGCTACTCATNNACCACAAACGTACCACCATATCCCACTTCTTTCTACACAGTCTAATACAGCACCTGTGCCGTATCCTACGCAACCTCATTTNCTATCC 5 0 3' arm Citrus_sinensis mirnest 100 100 -24.6 ............(((((.(((.(((((.((.((.(((((((((...(((....(((((...........))))).))).))))))))).)).)).)))))......))).)))))...... (-24.6)