mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCCCAGATACGTGAAGCGGTT CTGTATCCGTGCTGAGATT AATCGAGCTTTCTGTATCCGTGCTGAGATTTCATCAGTCACCACCATCAGCACTGATGAGACTCCCCAGATACGTGAAGCGGTTTACACGCTCA 4 3 3' arm Schistosoma_japonicum 19997615 Hammerhead_1 0.00002 sja-mir-3492 2e-20 -28.7 ....((((...((((.(((((((((.(((((((((((((..........).)))))))))).))..))).)))).)).)))).......)))). (-28.70)