mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCCACAACAGTTCGAGGACG ACCTCAATTGGTGTCGCTG CAATTGTTCCTCACCTCAATTGGTGTCGCTGACTCTGCACGAGATGAAGGTGCGGTGGCCACAACAGTTCGAGGACGGGGACGTCAA 4 1 3' arm Schistosoma_japonicum 19997615 100 sja-mir-3489 3e-44 -31.2 .....((((((..(((((((((.(((.(((....((((((.........)))))).))).))).))))).))))..))))))..... (-31.20)