mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACTGTCTGGACACAGTAGTA CGGACTGAGTTCGAGTCCCA TGCACAAGTGTGACTGTCTGGACACAGTAGTATAGTGGTGAACGCGGTGGCGTTTGACAAGAAGCGGACTGAGTTCGAGTCCCAGTGTGAA 4 4 5' arm Schistosoma_japonicum 19997615 Hammerhead_1 0.00008 sja-mir-3505 3e-16 -28.9 ..((((..((.((((...(((((.((((.((.(..((..((((((....))))))..))..).))..)))).))))))))).)).)))).. (-28.90)