mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTGCACTTACCTTCGCCTTG AGGTGGATGTTAGTGCAATTTA TTGTGAGGTGGATGTTAGTGCAATTTAGTGACGTAAATATATTGCACTTACCTTCGCCTTGCAAATAT 5 0 3' arm Schistosoma_japonicum 20092619 100 sja-mir-3479 4e-33 -26.9 (((..(((((((.((.((((((((.((..........)).)))))))).)).)))))))..))).... (-26.90)