mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGGACCAGGCTTCATTCCCC GGAATGTTGTCTGGCTCGAGG TCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAA TTCTCTCCCCCCTTGAAACAAGGGAGAGGAACAGGAGAAGGATGAGAGAAAGAATCACTGCAAAAAGGGAGAAAGAAACAAGGAAGAGAAAGAGAGAGGAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCATATTTATGTATGTCTCGTCGATCGATCGATCGATCTCCGCGGTTCTTGGACCGCATGCATACCCGAGATTTTGGTGAGTCTTTGGATGGACATCAAACGATTCTTTTTTTGG 3 0 3' arm Oryza_sativa mirnest mir-166 2e-52 osa-MIR166d 6e-58 -44.3 ....(((((((((((((..((((((.(((((((.((.........(((((...(((((....)))))..)))))..))))))))).))))))..)))))))))))))... (-44.3)