mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CACCAAAGGCCTCCGCCCTTC AGGGCAGAGCTTTTGGTTTT CCACTTCTTGACTGGAGGGGACACCAAAGGCCTCCGCCCTTCCATCCCTTGTATAGATAGAGAGGGAGGGCAGAGCTTTTGGTTTTTTCATGTTGTCAAAGAGT GGCGAGGAGGGATTCGAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTCTGAGCTACAGGCCCCGCCCCGTCTCCACTGGATCTGTTCCCGGAAGTACCCTAAAAAAAAGGAACCTTTCCTCTCCTCAGCCATTTCCATTTCGGGTTAAGAAGATGTGAAAGCACCTTTCTCTCTATAAGAACACGGTGCGTTACGAGGTGTAAAGTGGGAGAGAAGGGATTTCATAATTGGGGTTTTGAATAAGACGACCTTTTCATTTTGAATTTTTTTTTTTTCATATTGCAAAAGTAATAAGAATGAGAGGTGTTAAGCTTTTTATCATCCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAGAAAGGCATGCGAGAAAAGCATATTGGCTAGTGATTGTGAGGCCCCACTTCTTGACTGGAGGGGACACCAAAGGCCTCCGCCCTTCCATCCCTTGTATAGATAGAGAGGGAGGGCAGAGCTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATGGGTTTTTCGTGTTGTCAAAGAGTTGAACAATGAAAATAGATGGCGAGTGCCTGATCGAATTGATCGGGTCATGTAGGAACAAGG 2 1 5' arm Citrus_unshiu mirnest 100 100 -38.5 ..((((.(((((....(((((.(((((((((.((.((((((((.((..((((....)))).)))))))))).))))))))))).))))).....))))).)))) (-38.5)