mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGTGGCTTTCTTGCAAGT TTGTGGGGAAGGCACAAGT ACTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCATACTTGTGGCTTTCTTGCAAGT 3 0 3' arm Hordeum_vulgare micropc MIR444 9e-48 hvu-MIR444a 2e-42 -31.3 (((((..((((((.((((((((((...................((.....))..........(.....).)).)))))))).))))))..))))) (-31.30)