mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCTGGCTCCCTGTATGCCA GCGTGCGAGGAGCCAAGCATG AAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTC TCGGCAAAACCTGCACATCTCCAAAGCTCTCTTCTCACCAAACAGACATGTAGTACGAACGCCATTGTTCATCTTGTACTACTTTCTGTGTGTGTGTGTAGTTGTGTACTGTCTCTTCTTCTTCTTCTTCTTCTTCTTGTTTCTCCAGCTGCCATCTCCATCACAATGTCATGCCAGCTGAGCTCTTGGCTTTGGTGGAGTAGTAGTAGTTGTGTTGATGTACATATATAGGAGTTGTTGTTGTCTTCTCTTCTCTTCTCCAAGTGTTCTGGGCTTTGAGTCTAGCATTGGGGTGTGTGTGTGAGATGAGCACTGCAGTGTTGAAAGAAGGGAATACATGGCATATTGGCAAGGATGCAGAAGGTTTGGAAGCTGAAAAGCAAAAGAGAGGGGAAAAAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTCTCTCTGTCTCTATCTCTCTCTCATTGACTCATTGTGTGTGCTCACTTAAGATTACACGCT 2 0 5' arm Oryza_sativa mirnest mir-160 5e-72 osa-MIR160d 7e-77 -68 ......((.(((((.(((((((.(((((((((.((((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).))))...))))))).)))).)))).))))))))).))))))).))))).))..... (-68)