mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGTGCGAGGAGCCAAGCATG TGCCTGGCTCCCTGTATGCCA GAGAGGGGAAAAAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTCTCTCTGTCTCT TCGGCAAAACCTGCACATCTCCAAAGCTCTCTTCTCACCAAACAGACATGTAGTACGAACGCCATTGTTCATCTTGTACTACTTTCTGTGTGTGTGTGTAGTTGTGTACTGTCTCTTCTTCTTCTTCTTCTTCTTCTTGTTTCTCCAGCTGCCATCTCCATCACAATGTCATGCCAGCTGAGCTCTTGGCTTTGGTGGAGTAGTAGTAGTTGTGTTGATGTACATATATAGGAGTTGTTGTTGTCTTCTCTTCTCTTCTCCAAGTGTTCTGGGCTTTGAGTCTAGCATTGGGGTGTGTGTGTGAGATGAGCACTGCAGTGTTGAAAGAAGGGAATACATGGCATATTGGCAAGGATGCAGAAGGTTTGGAAGCTGAAAAGCAAAAGAGAGGGGAAAAAAAGGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTCTACTGCGGATGGCGTGCGAGGAGCCAAGCATGACCGTCTCTCTCTGTCTCTATCTCTCTCTCATTGACTCATTGTGTGTGCTCACTTAAGATTACACGCT 2 0 3' arm Oryza_sativa mirnest mir-160 6e-72 osa-MIR160d 8e-77 -77.3 ((((((((.......((...(((((.(((((((.(((((((((.((((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).))))...))))))).)))).)))).))))))))).))))))).))))).)).))))))))....... (-77.3)