mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGTTGCGGCCCGTCACAGATG TCTGTGACGGGCACCAACTCT CCATATCTCAAACAGGCCTAAAGTTGCGGCCCGTCACAGATGACCATCATCTGTGACGGGCACCAACTCTAGGCCCGATTGAGATAAC ATTCAATTTGCCCCTTTTCAAAAAAAATGTACTTCATTCAATATATATTGACGTGCTTTGCACGTGAAAAATCACCTCTTTTTGGAGTGCGGTGGCGGCTGGGGATGACCTCGGCTCTATCAGGGGGCAGCGCTGGACTGCGGCGGATGTGGAAGACCTCGGCTCCGTCGGGGTCTGCGCTTGACTGCAGCGGCGGCGGATGGGGAAGACCTCGGCTCCGGCGGTCACAGCGGTGGACTGCGGTGCCAGCGGCGGTGGAAGGGCACCACTAGTACAGATCCTTCTATCTGTGACGGGCTCTAATATGCTTAGAAATAGCGGGCCGTCACAAGGAAGTCATCTCAATCGGGCCGAAAAGTGCCCGATTGAGATATGGTCGCACAGACATGTTAGATGGGCATAAAACTTAAGCCCATCACGGATGACACCTATCAGTGACGGGCCGTAGTTTAGGCCCGATTAAGATAACATTCCATATCTCAAACGGGTCCATCTGTGACGGGCACCAATTTTAGGCCCGATTGAGATAACATTCCATATCTCAAACAGGCCTAAAGTTGCGGCCCGTCACAGATGACCATCATCTGTGACGGGCACCAACTCTAGGCCCGATTGAGATAACGTTCCATATCTCAAA 2 0 5' arm Oryza_sativa mirnest MIR821 0.00007 osa-MIR817 0.0000000000003 -52.1 ...((((((((...((((((.(((((..(((((((((((((((...)))))))))))))))..))))).))))))...)))))))).. (-52.1)