mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGTTGTTCTCTCTTTGT AAACTGAGAGAGCTTAGGTG ACAAACTGAGAGAGCTTAGGTGGTCATCGATGCTATCAAGACCCTGTTGTTCTCTCTTTGT 3 2 3' arm Cryptomeria_japonica micropc 100 100 -20.4 (((((..((((((((...((.((((...(((...)))..))))))...))))))))))))) (-20.40)