mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATGACTTACATTGTGAAACGG GTTTCACAATGTAAGTCATTC AAGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGCTAATGAATCTATATAAATATAGAATGACTTACATTGTGAAACGGGAGGAAGTAA GAAGCACGAACCTTCTTGTAGTGTCTATCCAGCAAAAGAAGAGAAAACATATGCTATAGCGAGTTTCTCTCAGGCCATGGCTGATCTGAACCTTGTGTTCTTGTTCTTCCTCCTCTTGTCTCCTCCCATCTTATCCGATGGGGTGCTTCAGGTGATGGGAACATCGATGAATAGGAGGAGCTTGCTTCAGGCCAAGGGTGGCTGCCCTGTGAGCTTTGAGAACCAGAACTACACGACCATCACCAGCAAGTGCAAATCGCCATGGCCTGCCGACCTCTGCTGCCCAGCTCTGAACGAGTTCGCATGCAATTTCAGCCAATATATCAACGACGAAAGCACCAACTGCGCAGAATCGATGTGGGCCTACCTCAACGCCCATGGAAACTATCCAGCTGGCCTGCTTTCAAACGAGTGCGCAGTGCTTGACTGCAACGGTAACAATAGCACCATTAGTACTAACCAAACTGCTAATGGAAGCGGCACCCGAGGGGCTAAAGGAATAACAGAGATGTACTCACTTGTGACGACCTTAATTGTATCTGGATTCCCGGTGTTATTGTTCTACTGAATGAAGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGCTAATGAATCTATATAAATATAGAATGACTTACATTGTGAAACGGGAGGAAGTAAGAAAAGATGCACTATCACACAGAATGGACATGGTACAGNTGNGGTAATAAGNTGCGGTTCAGCATATNTNTACATTACGAGGTAAGAGTAAAAAAA 0 0 3' arm Oryza_sativa mirnest MIR1122 6e-31 osa-MIR809d 1e-31 -46 ...((((.((((((((((((((((((((((((((((...........((((((..........))))))...........))))))))))))))))))))))).))))).)))). (-46)