mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGATTTGCCCAG GGGCAAGTTCTCCATTGGCAGG GGGCAAGTTCTCCATTGGCAGGTAGCCACTATGATATGCATCTCATAAATATTTGCAACTTTCTTAATGTGCAATCTGCCAAAGGAGATTTGCCCAG 3 1 3' arm Glycine_max micropc mir-399 0.00000009 mtr-MIR399a 0.000000000001 -41.82 ((((((((.((((.(((((((((.((((.((.((..((((.............))))....)).)).)).)).))))))))).)))))))))))).. (-41.82)