mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AATGACTTACATTGTGAAACG ATTTCACAATATAAATCATTCT TGCTTCCAAACACTACTCCCTCCATTTCACAATATAAATCATTCTAGCATTTTCCATAAAATGACTTACATTGTGAAACGAAGGAAGTATTTAGTCTTCA GATCACGGCATCACGCCAAGGATAATTGCATAAAGCAACTTGATTTGATTACAAGGGGTGGAAAAATGTGCTGCATATGCGAGTGCCTGTGCCTGCTAACACAAGGCACACCTGACTGATGCCGCATGCTTCCAAACACTACTCCCTCCATTTCACAATATAAATCATTCTAGCATTTTCCATAAAATGACTTACATTGTGAAACGAAGGAAGTATTTAGTCTTCACCTTGTGATTTCCAAGATCTCTTTTGACACTTGACATCGCAGTAGCTACAGCTTCCAAACACTATTTAGTCTTCACCTTAAGACTCAACAATACAGTTACCTAATGGACTAAAATTTATCTTCACACAAATATAAGAACAGCACAGGCGACAAAGTATTAAGCAAAAAAGGGTACAACTGTAATTGATGGGAGCTAAATCCTATTGATTCCAAGACTCACATTTCGATGCATTGAGAGGTTGCTTGCGTGGTATCAGCCACATGTGAAACCGCTTCAAGCATCCTCATCTTATTCTTCACTACTCACAAGTGCCATTCATCTGAACCTGACTCTGCATATGGTCACTGGAACCATATTGGCCAAGTAGCAGGCCTACAAGGGTAACCTTGAGTGATCGTTTGCAACTTTGCATAACTGGTTCCCTTTCCATGTAGTGTACAAAGTTTTCATTCCGCTCATGAAAGACAGGAAGATTGAGGGTCCTCGGAGAAATTCGCTGCTTCCTTCAAATCCATTTACATGACATATGGTTGATCCATGAAGGCCCATTCGAAGATCTGTTCATACTGTGAGGCGGCATGGTCCCATGTAA 3 0 3' arm Oryza_sativa mirnest MIR1122 0.0000000000004 osa-MIR809c 0.000000000005 -20.9 .......(((.(((..(((.((..(((((((((.(((.(((((.((..........)).))))).))).))))))))).)).)))))).)))........ (-20.9)