mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATGTAAGTCATTCTAGCATTT AGATATAGGATGACTTACATTG TGGATGAAGTACTCTCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGGTAATGAATGTAGATAGATATAGGATGACTTACATTGTAAAACGGAGGAAGTAAGAAAAGA TAAAGGAATATCAGAGATGTACTCACTTGTGACGACCTTNATTGTATGTGGACTCCCGGTGTTATTGTTCTACTGGATGAAGTACTCTCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGGTAATGAATGTAGATAGATATAGGATGACTTACATTGTAAAACGGAGGAAGTAAGAAAAGATACACTATCACACAGAATGGACATGTTACAGTTGTGGTNATAAGTTGCGTTTCAGCATATATATACATTACGAGATAAGAGTACCCCCAGATTTCCTTTTTTTTTTCTTCTTAATTTTCTTTCATGGCATTTACACTCATTCAATACATGTGGATATTTTTTTTCTTCTTTTGAGCAAT 5 0 5' arm Oryza_sativa mirnest MIR1122 6e-31 osa-MIR808 1e-28 -47.5 .........((((.(((((((((.((((((((((((((((((.....((..((((((((..........)))))))).))......)))))))))))))))))).))))))))).))))........ (-47.5)