mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGGCATTCTGTCCACCTCC AGGCGGCCAGTATGTCAA TTGGCATTCTGTCCACCTCCATTGATGTACTTCTTCTTACCTACCCAACTTATAAAATGATTTGTCTTTGAAGTAATGGAGGCGGCCAGTATGTCAA 4 0 5' arm Gossypium_hirsutum micropc MIR394 0.00008 ghr-MIR394b 3e-50 -28.52 .((((((.(((.((.(((((((.....((((((....................................))))))))))))).)).))).)))))). (-28.52)