mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACAGAAGAGAGTGAGCACA TGTTCGCTTCTCTTTCTGTCAGC GCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGGCCCCGCCGCGTGTTCGCTTCTCTTTCTGTCAGCATCTCTCATCACTCCCTC GAGTGCACCCCAAACACCAAGAACTCCTCCTTTTTTTCTCCTGTAATAATCCTGTACCCTCTCTCTCTATCTCCCTGCAGCTGCTGCCTAGCTCCAGTACGGCCACCGTCGTCGATCGGTCTCTCTCTCTCACCGGATCCGAGAAGCAAAGAACCGATCTTTTTTCTTCTTTTTTCCCCTGCGTGATGCTTCTTGTTTACTACTACGTGGGTGCAGTGCAGGTTTGTTGATCGATCTTGGGGCGGGGCGGGATCGAGCATATGAAAGGCGAGATTGTTGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGGCCCCGCCGCGTGTTCGCTTCTCTTTCTGTCAGCATCTCTCATCACTCCCTCCCGCATCCCCGCCCGATCTCGGGTCGATCTCTCATCTCG 1 2 5' arm Oryza_sativa mirnest mir-156 3e-36 osa-MIR156j 8e-61 -56.5 ..........((.((((.(((((((((((((((((((((((.(((((.((((((..(((...))).....)))..))).))))).)))))))).)))).)))))))))))..)))).))........ (-56.5)