mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACAGAAGAGAGTGAGCACC TGCTCACTCCTCTTTCTGTAACC TCTCATGAGATTGACAGAAGAGAGTGAGCACCCGGCGTGATGGCCGGCCTAAAATCTATCCGGTCCTCGCCGGCTGCTCACTCCTCTTTCTGTAACCTTTTTCTC GATGCATAAACCTTCAGCCCGGGGAGGTACGACCATCACCCGTCCCATCCATCTCCTCTGCTCCAAGAAGCAAACACCAAGAAACAAAGAGGGAGGGAGAGAGAGAGATAGAGGGAGAGAGTCCTTTTCTCTCACCAGCTCTCCTTTCAAGCTCAGTACGGTGGCCGCTCACCGGATCCAAGAAGAAAACCTCTCTTCCGTTTATGATTCTTTCTCTTGAGTTCTTGAGGTTTTATTTGGTTTTTCTTTGAGTTTTTACTCGTTTTTCTCGATTTCTCGATTTCGATGACTCGGAACTAAATAGGTTCTCTAATGACAAGTAAGAGCAAGAAATTTCTAGCACGGAGAAGCTCTCATGAGATTGACAGAAGAGAGTGAGCACCCGGCGTGATGGCCGGCCTAAAATCTATCCGGTCCTCGCCGGCTGCTCACTCCTCTTTCTGTAACCTTTTTCTCTCAGGTTT 4 2 5' arm Oryza_sativa mirnest mir-156 1e-28 osa-MIR156d 7e-36 -42.9 ......((((...(((((((.(((((((((.((((((....((((((............)))).)).)))))).)))))))))...)))))))........)))) (-42.9)