mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACATCATCATCATCATCATCA GTGATGAGGGCGGCGGTGGCG AAACCAGTAGCACATCATCATCATCATCATCATCTCAACCTCAATCTCAAGCTACAAAATCCTCCAAGAATTCCAAGAAACCAAAGGCTTGACACTATTGCATTGGATTGGCGGCATGAGGAGAGGAGGCTTCCATGGCGCGGCGGCGGCGTCGCCGACGACGGTNGCGAGGGCGGGGAGGGTGATGAGGGCGGCGGTGGCGGCGTTCTT GAGTCCATTGCATCGCCCATTTCGCTCATGGATCAGTAGGCAGCCAATCATTCTAGCTTCCATCTCAAAAACCAGTAGCACATCATCATCATCATCATCATCTCAACCTCAATCTCAAGCTACAAAATCCTCCAAGAATTCCAAGAAACCAAAGGCTTGACACTATTGCATTGGATTGGCGGCATGAGGAGAGGAGGCTTCCATGGCGCGGCGGCGGCGTCGCCGACGACGGTNGCGAGGGCGGGGAGGGTGATGAGGGCGGCGGTGGCGGCGTTCTTCCATGGCTACCATTGCTACACCTCCGTGGCGGGGCTGCTGGTGCTGCCGTTCTCGGCCGCCGTGCTGGCGTCGGGCGCCATGGCGTCGCCGTCGTCGGGAGCGCTGGCGGCGGTGTCGGCGAGGATACGGCGCATGTTCGAC 5 0 5' arm Oryza_sativa mirnest 100 100 -57.3 ......((.((.((((.((.((.((((((((.((((..((((..(((((.(((....(((((..(((......((((..........))))......)))....)))))...))).))))).......((..((....(((((((((...))))))).))..))..))))))...)))).)))))))).)).)).)))))).))...... (-57.3)