mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGAAGCAGGGCACGTGCT CATGTGCCCGTCTTCTCCACC AGAGAGAGAGGTAGACGGTGGCCGTGCACGGTGGAGAAGCAGGGCACGTGCTTCACCATCCACTCGCCTGCCGGCCGCCGGCCGCCATTGCCATGGATGGTTCTTCATGTGCCCGTCTTCTCCACCGCAGCACCAACTGTCTCGATCGGCGTCT GAAGCTAAGAATCTCGTCAGGAGAAGAATATATATATTGTTAGTGCATATGTCCAATTCACTTTCTTGGCTCCCCCCGGCAATGGCGACACAGAGAGAGAGAGGTAGACGGTGGCCGTGCACGGTGGAGAAGCAGGGCACGTGCTTCACCATCCACTCGCCTGCCGGCCGCCGGCCGCCATTGCCATGGATGGTTCTTCATGTGCCCGTCTTCTCCACCGCAGCACCAACTGTCTCGATCGGCGTCTGAAACTCTGAATACATGAATTCCCCCATGGCCAAAACCTTCCTCCCACGTTTGCATGTTGATCAATTTTATCCTCTTCTGCTTCTCAAATTTCTTCTTCGCTGGAGATATCGTAGTAGTAGCATTCTTTCTCAAGGGAATCCCTTCTTCCTCAAGGGCTGTTCTCGAAAGAGTGTCCTCTCTGTGATCAACC 4 0 5' arm Oryza_sativa mirnest MIR164 2e-49 osa-MIR164b 2e-49 -69 .......((...(((((((....((((.(((((((((((..(((((((((....((((((((...((.((.(((((...))))).))..))..))))))))....)))))))))..)))))))))))..))))..)))))))...))....... (-69)