mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGAACAGAGTGAGTATA TACTCCCTCTGTCCCAAAATA TATATGTGACATACTCCCTCTGTCCCAAAATAAACCCGATGTGACACATACTAGTACTTGTGTCCAAGATGTATTAGGATGTGGCACATCCGTACAATGTTGGTTTATTTTGGAACAGAGTGAGTATATGTTAAGC CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTGCTATTCCAGCTCTAAAAGGTTTTTATCGAACTATGGAGTTCTCTACTCGGTTACATTTCCACTGCCAACGTTTATGGATGGCGGCAACGCACAAGTTCCTGATTATCAACCCACTAAAAGCACAATTTTACAAGCATCATATATGTGACATACTCCCTCTGTCCCAAAATAAACCCGATGTGACACATACTAGTACTTGTGTCCAAGATGTATTAGGATGTGGCACATCCGTACAATGTTGGTTTATTTTGGAACAGAGTGAGTATATGTTAAGCAAGACTAATGCGGGCTTCCCTCTCGCTCATCTGTATCCGTTAGCTCCCACCTTGCTTGGGACTTTCTGAACATGCAGCCAAAAGGCCACGTTCGATGCACTGAAGAAGATAGCTGTGAAGCCAATCTAGTGTCTGAGGGAATGAGTTCGCTGAAATGTCAACAACGGTCAAACCCTGGGACTCAGAAGAACAAAGATAGTCCTGAATAAGCTTAAGGTCGTTCATAAGCTTTCGAGGATCCTGCGGGAGCACAGTATGCCTGGGAAAGCCCGGAGGGCAGACGAGCCGCGAGGAGAGCCTGGCGACCAAGCCCAGCATCCTCGCACAAAATGGGACCACAACGGGGCAACACAAGGTAGGCCAACAGGCGGAGCACGAAGACAGAGAGACAAAGCACAGCGAAGGGACACACACGGCAACAC 4 0 3' arm Oryza_sativa mirnest MIR1122 3e-64 osa-MIR1862d 0.000002 -45.9 ......((((((((((.((((((.((((((((((((.((((((.(((((.(((((((((........)).))))))).))))).))))))...........)))))))))))).)))))).)))))..)))))... (-45.9)