mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGAAGTGTTTGGGGGAACTC GTTCCTCTGAGCACTTCATTG ATGTCTCCTAGAGTTCCTCTGAGCACTTCATTGGGGATACAATTTTTCTAAATGATTATCCACTGAAGTGTTTGGGGGAACTCCCGGACCCAT 3 0 3' arm Arabidopsis_thaliana pmrd mir-395 1e-46 ath-MIR395a 7e-48 -42.9 (((..(((..(((((((((..(((((((((.((((......((((....)))).....)))).)))))))))..)))))))))..)))..))) (-42.90)