mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGCTGCCTCAATCTTCCTCC GAGAAAAGTAGAGGTGCAAAA TTAAGCTGAAGTGAGAAAAGTAGAGGTGCAAAAGAAGCAAGGAGGGAAATCAAGAAAATGGCCCTTTCCATCAGTTGCTGCCTCAATCTTCCTCCTCCACCATC AGAGATCATTGATTGATTAAGCTGAAGTGAGAAAAGTAGAGGTGCAAAAGAAGCAAGGAGGGAAATCAAGAAAATGGCCCTTTCCATCAGTTGCTGCCTCAATCTTCCTCCTCCACCATCTTGTATTGCTACCTCTGATCAACCTTTGGCTTCAAAAGCATCCCATTTGGCCTGGCCTAAGAATCCGAAGGAAAGATCATGGAAGACAAAGTGCTTGTTAGGGGTGGCAACCTTACTTGTAGGACTAGAGATGAGCAATTTAGTAGTAGGTGAACAAGAAATGGCTCTTGCTTGGGATCTACAGCAACAAGAAGAGATGGCGTCAAAATCAGTGATCAAAGTTCAGAGATGGAGTGACAGAAGAACATGCCCTTCTTGGCATGTGAACTCACTGGAAACTATTGTGCCTGAAAATCTGCCAAGGCCTTCGTTTCCTCGGAGATGGGACAATGCTGATTTTCGAAGAACTGAATCTTCTCGAGCTGCCCAATTGGCAG 3 2 3' arm Coffea_canephora mirnest 100 100 -20.3 ......((.((.(((.((.((.(((((((((..((.....((((((..((.......))..))))))...))..)))).))))).)).)).))))).))..... (-20.3)