mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCTGTA TGGGTAGTGTTGGAGATGGAG GTATGTTGGAAATGGGTAGTGTTGGAGATGGAGGGCGGCGGCCTTCGGAGGGAGCAAGAGACTTGAGATTGTTCCAAGACCATCATCATCATCATCATCTGTATTCGGCNGG AAATATAGCTTATTCCATACATTATTATTATTATCAAACTCATCTTCAAATTTGGCATTTGTTGGGGAGGGGGAGAGGGAGAGGGAGAGAGAGAGATAACAGATACTGAGGATCCATTTTATCATTTCCTCCTCTTGTTCTATTGCATCTGCTGCTCAATTCCAGGGCTCCTCTCAATATCAGAAGAGATTCGTTTCAGAGTACTGCAAGAAGGAGAATAAAGTAATAGAGTCAGCCAAATCAACAACTGATATTAGGAATAAGCAATCATCAACTTAATTGGCAATTATCAGGAAATCTGTACCGCATTGAGATTTTAATTAAAGACGAACCTGCTTCTGCTGCTGCTGCTGCTGCTGCTTGATACTACTGGATTGGTCGGTTGTATTGTATGTTGGAAATGGGTAGTGTTGGAGATGGAGGGCGGCGGCCTTCGGAGGGAGCAAGAGACTTGAGATTGTTCCAAGACCATCATCATCATCATCATCTGTATTCGGCNGGCGGCAGTTTCATGGATGTAACGANNTCTGCTGCTGCTNNNNNNNNTATCAATACCGGTGGCCNNNNNCGG 5 0 3' arm Coffea_canephora mirnest 100 100 -30.5 ....((((((.((((((.(((.(((.((((((((((....))))))((..(((((((...........)))))))....))..)))).))).))).)))))).))))))... (-30.5)