mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCA TGTTGATAACGGTGAAGACT ATCGTCATCATCATCATCATCATCATCATCATACATGTGTTGATAACGGTGAAGACTT ATCGTCATCATCATCATCATCATCATCATCATACATGTGTTGATAACGGTGAAGACTTTTGCTAAGGTCCCAGCAGCCAACAGTGAGGGCAACCGGCAACCGGCAACCGGCATCTGTCAGTTGGCAGGACTTTAGCCAAACGCTTTATTGACTTGGTCAATGTGGATGTCGGGCGCGTCTTTTGATTTTGTGCTGCTTTGCTCTTTTTCACCGAACTAAGCTTGTTTGGGGGAAGGGAGGTTATTTGTGTGATTTCCACTAATTTCAAAATTGCTAATTAATTGATGTTACGTTACTACATGGGACCTCTTCTGATCTGCCATTTATCATAATGTGGACATACATTCAACATTATATATATATATATTTTTTTGGTTCTCCAACACTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5 1 5' arm Cryptomeria_japonica mirnest 100 100 -10.8 ...(((.(((((...((((.((.(((........))))).))))...))))).))).. (-10.8)