mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTCTTCCTCTTCCTCTTCTT AGAGAGAGAGAGAGGGAGGGA AATTTCCCTCAACCCAGTTTTCCCTTTTCTCTCTCTTCCTCTTCCTCTTCTTCTACTTCCAACCCAAAGAACACATATATATCTCTAAAAAGTTGAACCCAAAAGTAGAATTCCAACGAGCAAGCAACCCATTTTTCAGTTTTTTAGAAAAAACCAGATTTTATTGAGAGAAGAAAGAGAAAGGGGTTGCTCTAATGAGAGATTTCTTTCAGCAATTCAGCATGTAGCTGAGGGGGAAGCTTGCAAGTAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGGGAGAAAACCCTTGTCTCAAATG GCACCCTTTTCCCATTTCTACTCACAAATTTCCCTCAACCCAGTTTTCCCTTTTCTCTCTCTTCCTCTTCCTCTTCTTCTACTTCCAACCCAAAGAACACATATATATCTCTAAAAAGTTGAACCCAAAAGTAGAATTCCAACGAGCAAGCAACCCATTTTTCAGTTTTTTAGAAAAAACCAGATTTTATTGAGAGAAGAAAGAGAAAGGGGTTGCTCTAATGAGAGATTTCTTTCAGCAATTCAGCATGTAGCTGAGGGGGAAGCTTGCAAGTAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGGGAGAAAACCCTTGTCTCAAATGCAAAGCCTGCTCGGTCACCACTCCGATTGAGAACCCCTCAAACAGCAAGGTCAACCATCTCCAACGATTCGAGATCACGAGGCAGCCGAGCATTGTCTCCTTTCGACATGAGGTTAAAGGATGATGACAGCCTTGTTAGCTGCCCTCCATATATGGCACCACACTATATGACTCCTACAATTTCGGCCAAAGCAAAAGTTCGAGCACGTAGTAACCCAAGGGAGAGATTTCCAGGTACGCCAAGGAGCGACGCATCTAGCAGAAGACAATCATTTCCTCCAACGCAAAGTGTTGGATCGTATAGAAACAGAGGTTTGATGTCGTCACCGAAAGATCATGCAACATTAGATGACAACCAA 3 0 5' arm Cucumis_melo_subsp._melo mirnest 100 100 -83.9 ................(((((((((((((((((((((.(((((.(((((.((((((((.((((((..(((.............))).....((((..................))))..((.((((((((.((((((..((((((.((.((((.....)))).))...))))))..)))))).))))))))....((((((....))))))))..((((((.....)))))).)))....))).)))))))).))))).))))).))))))))))))))).)))))).............. (-83.9)