mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCCAAGGATGACTTGCCGG GGTCTGAATCCATGCTGAT GAGATAGAGAGTGGAATGTAGCCAAGGATGACTTGCCGGGTATGTGCATGTACGCTTCAGGGAATTATATGCATCCCTGGTCTGAATCCATGCTGATATTTCCCGG 5 2 5' arm Brachypodium_distachyon pmrd MIR169_2 0.00000002 bdi-MIR169b 2e-55 -31.9 ..........(.((((..((((...((((..(..((((((...(((((((((..((....))...))))))))).))))))..).))))..))))....))))).. (-31.90)