mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGCTCAGGAGGGATAGCGCC CGCTATCCATCCTGAGTTTCA AGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTATCCATCCTGAGTTTCATCGGTT 2 0 5' arm Gossypium_hirsutum pmrd MIR390 0.0000000000004 ghr-MIR390c 3e-60 -42.7 ..((((.((.((((((((((.(((((((((.(((((.((((...(...((.((......)).))...)......)))).)).))).))))))))).)))))))))).)).)))) (-42.70)