mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTAAAGTGTTTAGGGGAACTC GTTCCCCTGACCACTTCATTG GAGTTCCCCTGACCACTTCATTGGGGATATATTAAAAACCTTAACTGAGGAAATTTTTTCCTACTAAAGTGTTTAGGGGAACTC 3 0 3' arm Gossypium_hirsutum pmrd mir-395 0.00002 vvi-MIR395d 0.000000004 -33.2 ((((((((((((.(((((.(.((((((...(((.....((((....)))).)))...)))))).).))))).)))))))))))) (-33.20)