mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCTGGCTCCCTGTATGCCT TCAAACAGCTGGAAGCCAGACGGA ATCAAACAGCTGGAAGCCAGACGGAAACAGTCCGGACTTCAGTTTATTAAGATGGGGATCTGATGAAGATAATCTGACTTGAGCATGCCTGGCTCCCTGTATGCCT 7 3 3' arm Gossypium_raimondii pmrd mir-160 0.00009 far-MIR160 0.000005 -29.8 ..((.((((..(((.(((((.((((.....)))).......(((((...((((....((((.....)))).))))....)))))....)))))))))))).))... (-29.80)