mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAATCTTGATGATGCTGCAT GCGTCACCATCAAGATTCACA ATTGGCGGATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGGTGGCTCTTCTTACTTAAAAGGTTTCCTTTTTCGTATGAGAATCTTGATGATGCTGCATCGGCAAATAT 3 0 3' arm Manihot_esculenta pmrd mir-172 0.000000002 bdi-MIR172a 0.0000000005 -52.2 ....((.((((((.((.(((((((((((..........((((((.((((((...))))))...(((.(((...))).))))).)))).(((..((((((...))))))..)))...))))))))))).)).)))))).))...... (-52.20)