mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCCACAGCTTTCTTGAACTT GCTCAAGAAAGCTGTGGGAGA TGCTTTTCCACAGCTTTCTTGAACTTCTTTCGTATCTTAAATCTGTTTTCAAGATTAAAAGTCCTAGAAGCTCAAGAAAGCTGTGGGAGAATA 1 0 5' arm Medicago_truncatula pmrd MIR396 1e-46 mtr-MIR396a 7e-48 -38.2 ...(((((((((((((((((((.(((((.......(((.(((((.......)))))..)))....))))).)))))))))))))))))))... (-38.20)