mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGAAGATTTGCCCTG GGGGAAATCTCTTTTGGCAGA TAGGGGAAATCTCTTTTGGCAGAGAGGAGTAGCTAGAGAGCTTGAACATGCTTGCTTCTAGTTTGCCAAAGAAGATTTGCCCTG 3 0 3' arm Medicago_truncatula pmrd mir-399 3e-41 mtr-MIR399k 2e-42 -36.19 (((((.((((((..(((((((((.(((((((((................)).)))))))..)))))))))..)))))).))))) (-36.19)