mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGACAGAAGACAGAGAGCAC GCTCATCATCCAAA ATGCACTTGCAGCTCATCATCCAAAACAGAACCGAATTGCAAATCCTGTGGCACCATTTTCGCCAATGGCTTTTGGTTCATGGATGGAGCAGTGTTGATCCCAACATTGTTCCATCCCTTTGACAGAAGACAGAGAGCAC 15 1 3' arm Nuphar_advena pmrd 100 100 -50.9 .(((....)))((((.((..........((((((((..((........((((.........))))...)).))))))))..((((((((((((((((....))))))))))))))))...............)))))).. (-50.90)