mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCCTGCTATTGTACCTGCTTT AATATGTTTATAGCTGGCTT TTATCTATTTAAAATATGTTTATAGCTGGCTTATAGCCTGCTATTGTACCTGCTTTAAGTGTACT ATAGTACAAAATTATATCGATCGATCAGCAAACTAATCATTGATCTTCAAGAGATTATTTCTACTTATATATCTCTCGATCTTCACAAATTACACATACGACATAGTATATGGCTCTTCTTTGCAGTGAGCTGCAGGTCAGGGCAATGGTGGTGATCGCCGCCGTGATGCTGGCGGCAGCGGCGCCGGCAGCGGCGCCGGCGGGGACGACGTGCGAGCAGCTGGAGTCGGTGGCGAGGTCTTGCACCGGGTACCTGAAGAGAAGCCTGATTTTCCTGAACGACGCGTGCTGCGACGGCGCCGAGAGCGTGTACGATGCCCTGACGACGGACGCCGCCGTCGACCTCGGCTTCGTGTGCCGCTGCCTGAGGGGCTTCGTCATCAGCGAGTCGCTTCGCCCTTACCTCTACAGGGTCGCCAATCTGCCTCGCCTGTGCCGCTTCAAGGATCGGGGCCCCATCCCATACAACAACTCCACTATCCACGACTGCAGGTTCAGTGGTACCACACGTCACTCGCTCTAATTGTAACACGCTAAGAGCAAATTTAATAGTATACCCCACTACTAGCTCTAAATCATCTATAGCCAATATAATAGCTAATTCATACAATAGTTGTTTACTATACTATTAATACCTGGTCCCACCTGTCATACACACATTACGTTTTGAAGCCCGTGCTGCAGCTGGCTACAGATTTGTAGCCCGCTGCTTTTCTCTCTTTTTCTTTATCTATTTAAAATATGTTTATAGCTGGCTTATAGCCTGCTATTGTACCTGCTTTAAGTGTACTTAATTTCGATAGAAATAAATATATATACTCCATGGAGTATATGTAAAATAAAAAAAAAAAAAAAAAAAGGGGCGGCTTGGGCCCAAGGGGGGGCCCGGGACCCAATTCCCCCCAAAGGGGGGCGAATTACGCGCCGCTCCGGGGGCGGCGTGTTTTAAAGGGCCGGGAGGGGGAAAACCCTGGGGGGTTCCCAAATTTAATCCCCTTGGCAAACAATCCCCCCTTTCCGCCCCGGGGGGGAAAAAAAAAGAAAAAAGGGCCCCCCCCCCGAATCGCCCCCTTCCCCAAAAAAGTGTGGGCCCCCCCCGGGGAGGGGGGGAAGGGGGGGGAGAGCGCCCCCCCCGGGGAGGCGCGGGCCAAAAATAAAA 5 1 3' arm Oryza_sativa mirnest 100 100 -16.8 .....((((((((.((.((..(((((.((((...)))).)))))...)).)).)))))))).... (-16.8)