mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGATTCGTTGTACTAGAATAT ATCTTAGTATTACAAATCTGG CATCCTAGTACTGAATGTGACATATCTTAGTATTACAAATCTGGATATACACCTGTCCAGATTCGTTGTACTAGAATATGTCACATCCAGTCTTAGTTT GCTGGGTACCGGGCCCCCCCTCGAGTTTTTTTTTCTTTTTTTTTCATCTTAAAACACTGTATTTTTTTTTCTTTGAGATGTTTAAAGGCACAGACCACTTATTTCACAAGCGCATATATAGTTTGGTCCTCGTGACATCTACCCCCTCTATCCCATAAAAACCATCCTAAACCATCCTAGTACTGAATGTGACATATCTTAGTATTACAAATCTGGATATACACCTGTCCAGATTCGTTGTACTAGAATATGTCACATCCAGTCTTAGTTTCGTTTTTTTGGACGAAAGGATATGTCACATCCAGTCTTAGTTTCGTTTTTTTGACGAAGGGAGTAGGTTGAAAGTAGAGCAGCATGAGCTGTTCGTTCAATGTGGTAGAATTCCCAGGGCCCTGCCTTACTCCACAAGGTCATCAAGTATGTCGCCCAAATTCGTGTACTTGAACTCGAACGGTCGAACCCTTCCCTGATCAGCTTCTCCGACGAACAGCAGACTCTCGGTTTCTCAGGCATCCCGTCGAAGCGGTCGGTTTTGACGTTGTACTGCGGGTACCTTCCGGCCATGAAACGGGCAAGCGCCAAGACGGTGGTGTTGAAGCTGCAGCAGATGTACCTCGCCGACGACTCTGCCGACGACAATGACGATGACTCCTTCTCGGCGAGGAATATCTCGGCGCGGCAGAGGTCGTCGACGTGAACGATCGACACGTAGCCGGTGAACGATTGCAGGGGCTTCAGGACTTCGAGATGCGTCTCATCACCGGATAGCAGGGAGAGGATGCCGGGGACGCTCGTCCTCGCCACCGGCGCCGGCGCT 3 0 3' arm Oryza_sativa mirnest MIR1122 3e-20 osa-MIR816 0.000005 -41.8 ....((((.((((.(((((((((((.(((((((.((.((((((((((......)))))))))).)).))))))).))))))))))).)))).))))... (-41.8)