mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGTAAGGAGGCCGGGGCCGTC TGACCCCGGTCTCCTCACCGG CAATGAGCCGTCGGATCTCCTAGTAAGGAGGCCGGGGCCGTCAGATCCGGTGACCCCGGTCTCCTCACCGGCGGATCCGGCGCCAAGAC GATTTACAAACTAAAATATTAAAAGATCCTATTTCGAAAGAATTCACGTCGGTTCGCCCGCCTCCTCCGCTCGCGTGCGCCGTCGCCGCCGCAGCTCCCTCTTCTCTACCGTGCTGCCGCCGCCGCTCCCTCCCAATGAGCCGTCGGATCTCCTAGTAAGGAGGCCGGGGCCGTCAGATCCGGTGACCCCGGTCTCCTCACCGGCGGATCCGGCGCCAAGACGCCAACCTCCGCTCGCAAGCGTCGTCGCCGTCGCCGTCGCCGTCGCCGCCGCAACTCCCTTCTCCTCTACCGTGCTGCCACCACCGCTAACTCCCAATGAGCCGCCAGATCCGTTAAGAGGAGGCTGGGGAGGAGAAGGGGAGTCGGGAGGGACACCACCGCCTGGAGCGAGGCACACCCCGGCCGCGGCCGCGACCCCGCATCCGTCGCCCGCTGCGAGCCGCATCTCTGCCCCGGTCTG 3 0 5' arm Oryza_sativa mirnest MIR1846 2e-23 osa-MIR1846a 8e-23 -44.1 ...((.((.(((((((((.((.((.((((((((((((.((((......)))).)))))))))))).)).)).))))))))))))).... (-44.1)