mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCAGCCACGGCTTACCTGGAAGA TTCCTGTCAGCCGTGGGTGCCT GATAATTCTCCAGCGTTGGAGTCAGCCACGGCTTACCTGGAAGATTGAATGTCTACTTCGGCTTTCTTCCTGTCAGCCGTGGGTGCCTCTTGCTACTGGAAGAGCT AAACCAACCAAACAAACAAACAAACAAACCCTGGCCGGCCTTTACAGGGGGATGGGGACTCAGTTAGTCATTTAACCTCTGGCAGTCTCCCGGTTCATAGGTATGGGCCTGTTTGACCAAGAGAATTTAAGTTCACTTGAACAGAATAAGGCATTCAAATGGAGAACCACTTTACAATAACCACATGGGTTTTCTTTCCTGTGTTCAAAGCTTGTGTGTGCTAGGCAAGCAGGCACTCTTACCGCTTGAGCTGCGCCCCCAGCTCGAGACACACCTTTTTAGGAACATTGTGAGGTACACCCATCTGTGACTGTGGCTCCCCCAGACCTGAAGGAGAACCTCTCAGACCACTGAAGCAGCTTCTTCTAGGAAGAGCATGTGTCTAGCTACCATTTGTATGATTGGTCAGAGGGTGATTTCGGGATAATTCTCCAGCGTTGGAGTCAGCCACGGCTTACCTGGAAGATTGAATGTCTACTTCGGCTTTCTTCCTGTCAGCCGTGGGTGCCTCTTGCTACTGGAAGAGCTCTGGGATGGTTCTGATTCGTTGCTTCAGTAATACCATGTGTTTATCAGCTAGCATGTTGACTGTGTTGTACACCCAGTAGATCCTATTGGTCATGCTTAGGGGGTGTTAAATAAATAGATACATTTATGATAGGGTAACTCTGGGGAGAGTCTTAATGGACATGGAAGGAAAGTTGGAGGACCAGATGTTCAGTATTTGAAGAACAGAAATTACAGGAAGAGTGCGACGGCCTGTGAGACAAAGGAAAAGGGAAACGATCCCCCACGCGAGAAAAAGAGGGCAGCACCAGAGAGAGCGCCAGGGAATGACATAGGAGCCCCCAAACGGAAAACACAGAACAACCAAGCTAGACAAAACAATACTCTGCTAGAACTCACCAAACAACGCGCTCACAAGGGAAGAAAAACAACGAAGTACAGTAAGTACACAAACGAGAGACCGCACACAAACCACACC 4 1 5' arm Mus_musculus mirnest 100 mmu-mir-3058 2e-42 -39.5 .....((.(((((.((.((((.((.((((((((.((..((((((......(((......)))..)))))).)).)))))))).)).)))).))..))))).))... (-39.5)