mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGATCAGGTTTACACACT TGCGGATTCCTGATCTCTCGC CTTGCCCTGCCTGGAGATCAGGTTTACACACTCTTTTGAGGACAATATTCCAGTGCGGATTCCTGATCTCTCGCCCCCAATT CCCCCATGGATTCTGCACGTCTTGCCCTGCCTGGAGATCAGGTTTACACACTCTTTTGAGGACAATATTCCAGTGCGGATTCCTGATCTCTCGCCCCCAATTGAGCCTGCTAGCCACACCCCACCCCTTGGAATATCACCATTTCCTTCTTAGCTTGTTTGCTTTTAGACGTGCCTTCTCTTGTAGTTCTCCAGCCTCCATGGAAGGATTCGTCCCATCCCAGTGGGGTATAGAAATAATATTTCCTTCAGGTTTTTATTTATCCTC 4 2 5' arm Mus_musculus mirnest 100 mmu-mir-3063 3e-19 -19 ........((..((((((((((.((...((((.......(((......)))))))..))..)))))))))).))........ (-19)