mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGAGATCAGGTTTCCACACT TGAGGAATCCTTATCTTTCCC CTTTCCCCGGCCGGAGATCAGGTTTCCACACTCTCTCCAGAACAATGTTCCAGTGAGGAATCCTTATCTTTCCCCCCCAATC CCCACCCCTCCATCGAATCGAATCCGCCACTTTCCCCGGCCGGAGATCAGGTTTCCACACTCTCTCCAGAACAATGTTCCAGTGAGGAATCCTTATCTTTCCCCCCCAATCGACCCAGTTGGCCACACCCCACCCCTTGGAATATCACCATTGCAATCATAGCTTGGGTTGCTTTTAAACGTGGATTATTTTGAAGTTTTCCAGCCTCCATCGAAGGATGGGTCAGATCCCAGTGGGGAAGAGAAATAAAATTTCCTTCAGGTTTTATAAA 4 0 5' arm Mus_musculus mirnest 100 mmu-mir-3063 0.00000000000002 -17.8 ........((..((((((.(((.((((.((((.......((((...)))).)))).)))).))).))))))..))....... (-17.8)