mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGGGAGGAACTGCCAGCTGA AGTTGGTAGACTCTCTGCT TTCAAACCGCTAAGTTGGTAGACTCTCTGCTCCAGGTTCTCAAGGAAAAGGGAGGAACTGCCAGCTGAAGGGACAAC AGAGCTCCTGAGAACCGTCCTCCTGTCGCTGCTCCGTCGGGACAACGCACTCTCAGCCTAGTCGAGAGCTCTGAGGGTTTCCCTCCAGGACCATGCGCGGCTCGGAGCTCTCGCTCTTGCTGTTGGCTCTGGTCCTCTGCCAGGCGCCCCGGGGGCCAGCTGCCCCGGTGTCGACAGGCGCAGGTGGAGGCACGGTCCTGGCTAAGATGTATCCGCGCGGCAGTCACTGGGCTGTGGGACACTTAATGGGAAAAAAGAGCACGGATGAATCCCCGTCCCTGTATGCGGCTGACAGAGACGGCCTGAAGGAGCAGCTGAGGGGGTACGTCCGCTGGGAAGAAGCTGCAAGGGATTTGCTGGACCTCCTAGAAGCTGCTGGGAACCAAAGCCACCAGCCACCTCAGCATCCGCCTCTCAGTCTCCAGCCTACTTGGGATCCCGAGGACGGCAGCTACTTTAACGACGTTCAAACCGCTAAGTTGGTAGACTCTCTGCTCCAGGTTCTCAAGGAAAAGGGAGGAACTGCCAGCTGAAGGGACAACGACAAGGGCGGCTTCCAAGGAGCAAAACAAAACCCTTCAAAGACTGCCTTCTGCAAACGTCAACTCTACTGGACCATCAACAAGATTTCCTTTGTGCATTTACTAACTATTCTCTTATNCTTTCACCGCACTAACTCGTGATTTTCGAGCACATCTCTGGTTTGACTGTTCTGTGACACTCCTACTAGAAGAGCTTCATGACGCTTTCACTAGCTTTGTGATAATCAGGCTCATGCACATCAATAAACTCGGATCCTGCAAAAAAAAAAAAAA 4 2 3' arm Mus_musculus mirnest 100 100 -24.3 ......((....(((((((((.((((((..(((..........)))..))))))...)))))))))...))...... (-24.3)