mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATGAAGTGTGATGTGGATAT ATTCATGAGAACACTTTCAAC GGAGTCCTGTGGTATTCATGAGAACACTTTCAACTCCATCATGAAGTGTGATGTGGATATCCGCAAGAAC GGCCAGAAAGACTCATACGTGGGTGACGAGGCCCAGAGCAAGAGGGGTATCCTGACCCTGAAGTACCCTATCGAACACGGCATTGTCACTAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCTGAGGAGCACCCGGTGCTTCTGACCGAGGCCCCCCTGAACCCCAAAGCTAACAGAGAGAAGATGACGCAGATAATGTTGAAACCTTCAATACCCCAGCCATGTACGTGGCCATTCAGGCGGTGCTGTCCTTGTATGCATCTGGGCGCACCACTGGCATTGTCATGGACTCTGGTGACGGGGTCACACACACAGTGCCCATCTATGAGGGCTACGCCCTTCCCCACGCCATCTTGCGTCTGGACCTGGCTGGCCGGGACCTGACAGACTACCTCATGAAGATCCTGACTGAACGGGGCTACAGCTTTACCACCACTGCTGAGAGGGAAATTGTTCGTGACATAAAGGAGAAGCTGTGCTATGTTGCCCTGGATTTTGAGCAAAGAAATGGCTACTGCTGCATCATCTTCCTCCTGGAGAAGAGTTACGAGCTGCCGACGGGCAGGTGATCACCATTGGCAATGAGCGGTCCGGTGTCCGGAGGCACTCTTCCAGGCCTTCCTTCCTGGGCATGGAGTCCTGTGGTATTCATGAGAACACTTTCAACTCCATCATGAAGTGTGATGTGGATATCCGCAAGAACTGTTTGCACTACAGTGCGTCTGGTGGTACCACCATGTCCAGCATTGTGAGGATGCGAAGGGATCCCAGGCCTACCTACCGAGAAATAAACATGGCCCGGACACAATCTGCGGGGGGGCCCTTGACCCGGGCACTTCGATTGTCCACGGTAATATGGCCCAACCCGATTAAAGGGACCGGCATGAAAAAAAACGCAAGCAAGCCAAAAGAG 5 1 3' arm Mus_musculus mirnest 100 gga-mir-3533 4e-18 -19.2 ....((.(((((((((((((...(((((((............)))))))..)))))))).))))).)).. (-19.2)