mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGGCTCTAGCCAGGGGCTTGA AGGGTCCTGGCAGGAGTCCTGCT GAGTCAGGGTCCTGGCAGGAGTCCTGCTCTCAACTGGTTCCAGGCTCTAGCCAGGGGCTTGAATGCAAGC GAGTCAGGGTCCTGGCAGGAGTCCTGCTCTCAACTGGTTCCAGGCTCTAGCCAGGGGCTTGAATGCAAGCTGCTCATCGAAAAGGAAGGATGCTCCTGAGATCTGCAGTAAACAAAGCCACAAAAAACACAGCATTTGCAGGGATGTTGTGGGAATCCCCACAATCATACTCACCTGTTCCTGTTATCTCTGCTTGGAATTATATAATCCTGGTGTGGGGTAAAGAATGATA 2 1 3' arm Mus_musculus mirnest mir-344 3e-25 mmu-mir-344g 2e-25 -28.4 ...(((((.(((((((.((((.((((..((.....))...)))))))).))))))).)))))........ (-28.4)