mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGTCAGGGTCCTGGCAGGAGT TCTAGCCAGGGGCTTGAAT GAGTCAGGGTCCTGGCAGGAGTCCTGCTCTCAACTGGTTCCAGGCTCTAGCCAGGGGCTTGAAT GAGTCAGGGTCCTGGCAGGAGTCCTGCTCTCAACTGGTTCCAGGCTCTAGCCAGGGGCTTGAATGCAAGCTGCTCATCGAAAAGGAAGGATGCTCCTGAGATCTGCAGTAAACAAAGCCACAAAAAACACAGCATTTGCAGGGATGTTGTGGGAATCCCCACAATCATACTCACCTGTTCCTGTTATCTCTGCTTGGAATTATATAATCCTGGTGTGGGGTAAAGAATGATA 5 0 5' arm Mus_musculus mirnest mir-344 6e-23 mmu-mir-344g 3e-24 -28.4 ...(((((.(((((((.((((.((((..((.....))...)))))))).))))))).))))).. (-28.4)