mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAGTGCTGGAATTAAAGGCATG TTGCTTTGCTTTCTGGTATTTTA ATAACTGGCTTTGCTTTGCTTTCTGGTATTTTAAGACGGTCTCGCTATGTTAAGACTAGCTGCCCCAAACCCAGAGCAATCCTCTTTGAGTGCTGGAATTAAAGGCATGCACCACC TTTTGAAGGTACGTTTCCTTGTTCAGACAATCCTTACCTCCCTTGGGACCAGCGAAGGTGAAGATCCCTGGATCTTAAGAGTACCAGGTCAGCGCCGATCTTGTGACACACTGACAAGTATGTCTATTCCAAATAGATGTATATCTGTGTGCTCAGTGTATCCCTGTGTGAATGAAGCCACTTGGATTCTGGGGTGGGCAAAGAAGACCTGAAAAGATTCTACAGCAGAAGGCCTGTGTCGCCACCAAAACCCCTCCCCCTGGTATCATTGTACCCACCTTGTACTCTGTTCAGGAGGCTGCCCATGGAGGACTGCCACCCCTCCAGATGAAGGCTCCCACTACCCGATGCAGTTGAGTCCCATCCTGCCCTCTCTGCCCACACTGGCTTCCTGCTGCTATTCTAGTGCCTCAAATAAACCGTTCACACCCTTTCCTGCTATGTCCTGGTTGTCCTTAACCCGTCTTCCCCCTCCGGTCCAAAGGGACCTGGGGATCCTGCAGGCCCACAGCCCTGCTTAAGCGATTCTGAAAGACCAACCCCGATACAGTGATACATTCCTATGATGCCATCATAGCAGAAGCAGAGGTCTCTGGGAGGCCAGCCTGGTGCATAGCAAATCCCAGGAATCTAGGCCCATTTAGTGAGACAGGCCTGAGAGAAAAGAGAGAGAGCAAAGGCAGAGAGAACTTGAAAGTGTGCTGTCTCAGGCTGAAAGCTGAGAAGTACAGCTACCCATAAAGGCAGGCCCATCAGGCTGGTCACACATTCCCAAGCTTTGTCTGCCCCAGAGACTTCAGAGGCCTGCTGTTGCCACTTGTCCTTCATAAACTACCCTGTAGTCTAAGCCATGGGAGTCTGGCCCAGGCAAGTGATACTTGTCCACCCTATAACTGGCTTTGCTTTGCTTTCTGGTATTTTAAGACGGTCTCGCTATGTTAAGACTAGCTGCCCCAAACCCAGAGCAATCCTCTTTGAGTGCTGGAATTAAAGGCATGCACCACCGC 4 0 3' arm Mus_musculus mirnest 100 mmu-mir-1186 0.000000001 -28.3 .......((..((((((...(((((((((((.((((.(((...((...((((....)))).)).....)))..((....)).)))).)))))))))))...)))))).))...... (-28.3)