mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAGTGCTGGAATTAAAGGCGT GCCTATGTGCCACGCTCTG CTCTGAAATCCGCCTGCCTCAGAGTGCTGGAATTAAAGGCGTGCGCCACCACTGCCCGGCGCCTGCTGTTTTTCATTTGTCCGGAATGCCTATGTGCCACGCTCTGCGGCTAGGTAAATAAGTA GGGATCAGTTAAGGGGGAAAAAAAAGGCAGGGGGGGGCGACAAACAGTGCATACAGGTTTGAGTGAGCGGCCAACTTGCCCCGAGGCCTGGACCCACCCTTTGCCATCCCCAATTCACCGCCAGAGACTCCAGCGCAGACTGATTTGAGTAGATTTGAAACCTGTGGGAGAGAAATACACCGTGAAACCTGGGAACACCCTTTCCTTGGGCCCTACCTAAAAGATGGCAGCAAGTGACAGCCTTCCCAGTTCTATCCAATCATCCTTCAGGTAGCTGCCATTTCCCAGGTGTGCATCCCTGAGTGCCTTTGGTCTCTGGAGCCCCCTTTCTTTAAGCCTACTGCTTTTCTTTTTTTTTTTCTTTTGTCTTTTTTTTTTTTTTTGAGACAGGGCTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCTGGAGCTCTGAAATCCGCCTGCCTCAGAGTGCTGGAATTAAAGGCGTGCGCCACCACTGCCCGGCGCCTGCTGTTTTTCATTTGTCCGGAATGCCTATGTGCCACGCTCTGCGGCTAGGTAAATAAGTATGGTTTTATCTAAGGAAATTCCAACAATCTTTACTCTCTGTCAGATACCAAACTTATTCAAAAGAATTAAAATGGCTCTGC 3 2 5' arm Mus_musculus mirnest Metazoa_SRP 0.0004 mmu-mir-1186 0.0000000001 -37.3 ...........(((((((.(((((((.(((...((.(((((((((((..........)))))...(((.............))).)))))).))..)))))))))).))).))))......... (-37.3)