mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACGCCACATTTCCCACGCCGCG CGGCGCCGGGGAGTGGGTCTTC GGCCCCCCACGAGCGGCGCCGGGGAGTGGGTCTTCCGTACGCCACATTTCCCACGCCGCGACGCCGGGGG GGGCCTCGATCAGAAGGACTTGGGCCCCCCACGAGCGGCGCCGGGGAGTGGGTCTTCCGTACGCCACATTTCCCACGCCGCGACGCCGGGGGGAGTGTCCGGCGCTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTTTCTTTTCCTCCGCTGACTAATATGCTTAAATTCAGCGGGTCGCCACGTCTGAGGATAGTCGA 4 2 3' arm Mus_musculus mirnest SSU_rRNA_eukarya 2e-20 mmu-mir-2182 3e-28 -33.3 ..(((((..((.((((((..(((((((((((.........))).)))))))).))))))..))..))))) (-33.3)