mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAGGCAGAGGCAGGAGGA CTCAAGTTCAATGTCTGTCT TGAAACAGAAGGTTCTCAAGTTCAATGTCTGTCTAGGCTATAGAGGGAGTTCAAGGCCAGCCTGGGTGTTTTAGGGAGCCCTCTCTCAAAAAGTAAGGAGATACCCAGTCAGGGATGGTGTACCCTTTGATCTCAGCACTGGGGAGGCAGAGGCAGGAGGATCTCTGAGTGT GCATCTACCCCTATGCTTGGCTTTCAGAGAAGCCAGGGGTGGCCTGAGTTCATCCTGGCCCTGTCTGCTGCGAAGACTCTGCCCAACTCCGAAGTTAACTCCCAGAAAAGGGACAGCACAGAGACAGAAGTGTCATCCTAGCAGGGTCTGGTGGGACAAGCCTGTTCTGGGGGAACTGAAACAGAAGGTTCTCAAGTTCAATGTCTGTCTAGGCTATAGAGGGAGTTCAAGGCCAGCCTGGGTGTTTTAGGGAGCCCTCTCTCAAAAAGTAAGGAGATACCCAGTCAGGGATGGTGTACCCTTTGATCTCAGCACTGGGGAGGCAGAGGCAGGAGGATCTCTGAGTGTTTAAGGCCAACCTGGTCTACAGAACAAGTTCCAAGACAGCTATGGCTACCACT 5 1 3' arm Mus_musculus mirnest 7SK 0.000003 mmu-mir-709 0.000000002 -48.8 .....((((.(((((((..(((...(((((.((((((((.(((((((...(((...((...((((((((((((((((....)))))...........)))))))))))....)).)))....))))))).....))).))))).)))))..)))..)))))))))))..... (-48.8)